DetoxFungiV1, Main, Exploration, bibRecord, 000787

Pathogenic adaptations of Colletotrichum fungi revealed by genome wide gene family evolutionary analyses.

Identifieur interne : 000787 ( Main/Exploration ); précédent : 000786; suivant : 000788

Pathogenic adaptations of Colletotrichum fungi revealed by genome wide gene family evolutionary analyses.

Auteurs : Xiaofei Liang [République populaire de Chine] ; Bo Wang [République populaire de Chine] ; Qiuyue Dong [République populaire de Chine] ; Lingnan Li [République populaire de Chine] ; Jeffrey A. Rollins [États-Unis] ; Rong Zhang [République populaire de Chine] ; Guangyu Sun [République populaire de Chine]

Source :

PloS one [ 1932-6203 ] ; 2018.

RBID : pubmed:29689067

Descripteurs français

KwdFr :
- Acclimatation (génétique), Adaptation biologique (génétique), Chine (MeSH), Colletotrichum (génétique), Colletotrichum (pathogénicité), Famille multigénique (génétique), Fragaria (microbiologie), Gènes fongiques (MeSH), Génome fongique (génétique), Interactions hôte-pathogène (génétique), Japon (MeSH), Maladies des plantes (microbiologie), Malus (microbiologie), Phylogenèse (MeSH), Évolution moléculaire (MeSH).
MESH :
- génétique : Acclimatation, Adaptation biologique, Colletotrichum, Famille multigénique, Génome fongique, Interactions hôte-pathogène.
- microbiologie : Fragaria, Maladies des plantes, Malus.
- pathogénicité : Colletotrichum.
- Chine, Gènes fongiques, Japon, Phylogenèse, Évolution moléculaire.

English descriptors

KwdEn :
- Acclimatization (genetics), Adaptation, Biological (genetics), China (MeSH), Colletotrichum (genetics), Colletotrichum (pathogenicity), Evolution, Molecular (MeSH), Fragaria (microbiology), Genes, Fungal (MeSH), Genome, Fungal (genetics), Host-Pathogen Interactions (genetics), Japan (MeSH), Malus (microbiology), Multigene Family (genetics), Phylogeny (MeSH), Plant Diseases (microbiology).
MESH :
- genetics : Acclimatization, Adaptation, Biological, Colletotrichum, Genome, Fungal, Host-Pathogen Interactions, Multigene Family.
- microbiology : Fragaria, Malus, Plant Diseases.
- pathogenicity : Colletotrichum.
- China, Evolution, Molecular, Genes, Fungal, Japan, Phylogeny.

Abstract

The fungal genus Colletotrichum contains hemibiotrophic phytopathogens being highly variable in host and tissue specificities. We sequenced a C. fructicola genome (1104-7) derived from an isolate of apple in China and compared it with the reference genome (Nara_gc5) derived from an isolate of strawberry in Japan. Mauve alignment and BlastN search identified 0.62 Mb lineage-specific (LS) genomic regions in 1104-7 with a length criterion of 10 kb. Genes located within LS regions evolved more dynamically, and a strongly elevated proportion of genes were closely related to non-Colletotrichum sequences. Two LS regions, containing nine genes in total, showed features of fungus-to-fungus horizontal transfer supported by both gene order collinearity and gene phylogeny patterns. We further compared the gene content variations among 13 Colletotrichum and 11 non-Colletotrichum genomes by gene function annotation, OrthoMCL grouping and CAFE analysis. The results provided a global evolutionary picture of Colletotrichum gene families, and identified a number of strong duplication/loss events at key phylogenetic nodes, such as the contraction of the detoxification-related RTA1 family in the monocot-specializing graminicola complex and the expansions of several ammonia production-related families in the fruit-infecting gloeosporioides complex. We have also identified the acquirement of a RbsD/FucU fucose transporter from bacterium by the Colletotrichum ancestor. In sum, this study summarized the pathogenic evolutionary features of Colletotrichum fungi at multiple taxonomic levels and highlights the concept that the pathogenic successes of Colletotrichum fungi require shared as well as lineage-specific virulence factors.

DOI: 10.1371/journal.pone.0196303
PubMed: 29689067
PubMed Central: PMC5915685

Affiliations:

République populaire de Chine, États-Unis

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000848
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Le document en format XML

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<term>Adaptation, Biological (genetics)</term>
<term>China (MeSH)</term>
<term>Colletotrichum (genetics)</term>
<term>Colletotrichum (pathogenicity)</term>
<term>Evolution, Molecular (MeSH)</term>
<term>Fragaria (microbiology)</term>
<term>Genes, Fungal (MeSH)</term>
<term>Genome, Fungal (genetics)</term>
<term>Host-Pathogen Interactions (genetics)</term>
<term>Japan (MeSH)</term>
<term>Malus (microbiology)</term>
<term>Multigene Family (genetics)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Diseases (microbiology)</term>
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<term>Adaptation biologique (génétique)</term>
<term>Chine (MeSH)</term>
<term>Colletotrichum (génétique)</term>
<term>Colletotrichum (pathogénicité)</term>
<term>Famille multigénique (génétique)</term>
<term>Fragaria (microbiologie)</term>
<term>Gènes fongiques (MeSH)</term>
<term>Génome fongique (génétique)</term>
<term>Interactions hôte-pathogène (génétique)</term>
<term>Japon (MeSH)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Malus (microbiologie)</term>
<term>Phylogenèse (MeSH)</term>
<term>Évolution moléculaire (MeSH)</term>
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<term>Adaptation, Biological</term>
<term>Colletotrichum</term>
<term>Genome, Fungal</term>
<term>Host-Pathogen Interactions</term>
<term>Multigene Family</term>
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<term>Adaptation biologique</term>
<term>Colletotrichum</term>
<term>Famille multigénique</term>
<term>Génome fongique</term>
<term>Interactions hôte-pathogène</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Fragaria</term>
<term>Maladies des plantes</term>
<term>Malus</term>
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<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Fragaria</term>
<term>Malus</term>
<term>Plant Diseases</term>
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<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Colletotrichum</term>
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<term>Evolution, Molecular</term>
<term>Genes, Fungal</term>
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<term>Phylogeny</term>
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<term>Gènes fongiques</term>
<term>Japon</term>
<term>Phylogenèse</term>
<term>Évolution moléculaire</term>
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<front><div type="abstract" xml:lang="en">The fungal genus Colletotrichum contains hemibiotrophic phytopathogens being highly variable in host and tissue specificities. We sequenced a C. fructicola genome (1104-7) derived from an isolate of apple in China and compared it with the reference genome (Nara_gc5) derived from an isolate of strawberry in Japan. Mauve alignment and BlastN search identified 0.62 Mb lineage-specific (LS) genomic regions in 1104-7 with a length criterion of 10 kb. Genes located within LS regions evolved more dynamically, and a strongly elevated proportion of genes were closely related to non-Colletotrichum sequences. Two LS regions, containing nine genes in total, showed features of fungus-to-fungus horizontal transfer supported by both gene order collinearity and gene phylogeny patterns. We further compared the gene content variations among 13 Colletotrichum and 11 non-Colletotrichum genomes by gene function annotation, OrthoMCL grouping and CAFE analysis. The results provided a global evolutionary picture of Colletotrichum gene families, and identified a number of strong duplication/loss events at key phylogenetic nodes, such as the contraction of the detoxification-related RTA1 family in the monocot-specializing graminicola complex and the expansions of several ammonia production-related families in the fruit-infecting gloeosporioides complex. We have also identified the acquirement of a RbsD/FucU fucose transporter from bacterium by the Colletotrichum ancestor. In sum, this study summarized the pathogenic evolutionary features of Colletotrichum fungi at multiple taxonomic levels and highlights the concept that the pathogenic successes of Colletotrichum fungi require shared as well as lineage-specific virulence factors.</div>
</front>
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<Abstract><AbstractText>The fungal genus Colletotrichum contains hemibiotrophic phytopathogens being highly variable in host and tissue specificities. We sequenced a C. fructicola genome (1104-7) derived from an isolate of apple in China and compared it with the reference genome (Nara_gc5) derived from an isolate of strawberry in Japan. Mauve alignment and BlastN search identified 0.62 Mb lineage-specific (LS) genomic regions in 1104-7 with a length criterion of 10 kb. Genes located within LS regions evolved more dynamically, and a strongly elevated proportion of genes were closely related to non-Colletotrichum sequences. Two LS regions, containing nine genes in total, showed features of fungus-to-fungus horizontal transfer supported by both gene order collinearity and gene phylogeny patterns. We further compared the gene content variations among 13 Colletotrichum and 11 non-Colletotrichum genomes by gene function annotation, OrthoMCL grouping and CAFE analysis. The results provided a global evolutionary picture of Colletotrichum gene families, and identified a number of strong duplication/loss events at key phylogenetic nodes, such as the contraction of the detoxification-related RTA1 family in the monocot-specializing graminicola complex and the expansions of several ammonia production-related families in the fruit-infecting gloeosporioides complex. We have also identified the acquirement of a RbsD/FucU fucose transporter from bacterium by the Colletotrichum ancestor. In sum, this study summarized the pathogenic evolutionary features of Colletotrichum fungi at multiple taxonomic levels and highlights the concept that the pathogenic successes of Colletotrichum fungi require shared as well as lineage-specific virulence factors.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liang</LastName>
<ForeName>Xiaofei</ForeName>
<Initials>X</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China.</Affiliation>
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<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Bo</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Dong</LastName>
<ForeName>Qiuyue</ForeName>
<Initials>Q</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China.</Affiliation>
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<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Lingnan</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China.</Affiliation>
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<Author ValidYN="Y"><LastName>Rollins</LastName>
<ForeName>Jeffrey A</ForeName>
<Initials>JA</Initials>
<AffiliationInfo><Affiliation>Department of Plant Pathology, University of Florida, Gainesville, United States of America.</Affiliation>
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<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Rong</ForeName>
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<AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China.</Affiliation>
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<Author ValidYN="Y"><LastName>Sun</LastName>
<ForeName>Guangyu</ForeName>
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<AffiliationInfo><Affiliation>State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China.</Affiliation>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D000064" MajorTopicYN="N">Acclimatization</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000220" MajorTopicYN="N">Adaptation, Biological</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020231" MajorTopicYN="N">Colletotrichum</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D019143" MajorTopicYN="Y">Evolution, Molecular</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D031985" MajorTopicYN="N">Fragaria</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005800" MajorTopicYN="N">Genes, Fungal</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D016681" MajorTopicYN="N">Genome, Fungal</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D054884" MajorTopicYN="N">Host-Pathogen Interactions</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D007564" MajorTopicYN="N">Japan</DescriptorName>
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Pathogenic adaptations of Colletotrichum fungi revealed by genome wide gene family evolutionary analyses.

Pathogenic adaptations of Colletotrichum fungi revealed by genome wide gene family evolutionary analyses.

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